FOCUS (Fine-mapping Of CaUsal gene Sets) is software to fine-map transcriptome-wide association study statistics at genomic risk regions. The software takes as input summary GWAS data along with eQTL weights and outputs a credible set of genes to explain observed genomic risk. See more The easiest way to install is with pip: Check that FOCUS was installed by typing If that did not work, and pip install pyfocus --user was specified, please check that your local user path … See more Here is an example of how to perform LDL fine-mapping while prioritizing predictive models from adipose tissues: This command will scan … See more If you have any questions or comments please contact [email protected] For performing various … See more Version 0.6.10: Fixed bug where weight database allele mismatch with GWAS broke infererence. Version 0.6.5: Fixed bug in newer versions of matplotlib not accepting string for … See more WebNov 1, 2024 · Swift Package Manager is a tool for managing the distribution of Swift code. It’s integrated with the Swift build system to automate the process of downloading, …
Genomic Epidemiology and Characterization of Methicillin …
WebopenSNP is an open source website where users can share their genetic information. [1] Users upload their genes, including gender, age, eye color, medical history, Fitbit data. With a focus on user patient-led research (PLR), there is potential to redefine the way health research is conducted. "It promises to be a vital supplement to standard ... WebJun 26, 2024 · GitHub - martin19/snpserver: SnpServer is modular multi-platform screen sharing server written in C++ with similar features like VNC. Major focus is put on screen capture performance using state of the art hardware accelerated compression algorithms built into modern cpu/gpu/socs. martin19 / snpserver Public Notifications Fork 2 Star 2 … autotoxämie
GitHub - zhengxwen/SNPRelate: R package: parallel computing …
WebThe CFSAN SNP Pipeline is a Python-based system for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety. The SNP Pipeline was developed by the United States Food and Drug Administration, Center for Food Safety and Applied Nutrition. WebMutMap can automatically merge multiple FASTQs and BAMs. Of course, you can merge FASTQs or BAMs using cat or samtools merge before input them to MutMap. If you specify -c multiple times, please make sure that those files include only 1 individual. On the other hand, -b can include more than 1 individuals because those are bulked samples. … WebTool to phase common sites, typically SNP array data, or the first step of WES/WGS data. phase. Ligate multiple phased BCF/VCF files into a single whole chromosome file. Typically run to ligate multiple chunks of phased common variants. ligate. Tool to phase rare variants onto a scaffold of common variants (output of phase_common / ligate). hra amnesia